Web Reference: MRtrix Tutorial #4: Preprocessing Overview Just like other neuroimaging data, diffusion data should be preprocessed before it is analyzed. Preprocessing removes sources of noise from the image, such as movement artifacts and other distortions. Chapter 4 of the MRtrix tutorial of Andy's Brain Book: https://tinyurl.com/ycww9u94 Table of Contents: 0:00 Overview of Preprocessing 0:24 Denoising the Data 0:58 Examining the Residuals... Jul 12, 2024 · There was a recent thread on the mrtrix forums that said that we should actually be running dweidenoise after eddy correction, and while searching for that post I came across this one and thought I’d link to the answer for what it’s worth (even though it’s a year later): Eddy/topup on denoised data
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