Web Reference: The following tutorial complements the Unix tutorial on automating the analysis. I recommend reading through that chaper if you need to review the Unix terms for scripting. What is Scripting? MRtrix Tutorial #9: Scripting Andy's Brain Tube 19.8K subscribers Several of the steps and explanations are derived from Marlene Tahedl’s excellent BATMAN tutorial, and in many places I use her file notation. I would also like to thank John Plass of the David Brang lab at the University of Michigan for sharing his scripts with me and answering my questions.
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