Web Reference: Oct 21, 2025 · To this end, we propose a new structure-based clustering algorithm to analyse and filter datasets of protein–ligand complex structures. By identifying large similarities between PBDbind and CASF... Proteina-Complexa combines joint sequence-structure generation in a continuous latent space with inference-time search for de novo protein binder design. In a massive-scale experimental benchmark — over 1M proteins screened against 127 targets via multiplexed phage display — it outperforms all open methods, achieving picomolar binders and 50%+ hit rates across diverse targets. Sep 1, 2025 · The authors describe how breakthrough tools, such as AlphaFold, RFdiffusion, and BindCraft have contributed to solving this problem, and future work needed to realize this technology’s potential.
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