Web Reference: smallrnaseq - tool for short RNA analysis Contents: Introduction Command Line Interface Screencast Citation FAQ Installation Linux Mac OSX Windows Vienna package Required dependencies Installing R for differential expression Using smallrnaseq Usage Configuration file settings Examples Outputs Differential expression Adapter trimming Aligners ... This is a tutorial for the command line tool of smallrnaseq for processing of small RNA seq data. Installing the package provides the command smallrnaseq in your path. This allows users is a command line interface to the library without the need for any Python coding at all. It provides a set of pre-defined functions with parameters specified in a text configuration file.
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